The win was the third straight for the Highlanders (9-8) and gave coach Jim Engles his 50th career victory.
Coming off an 83-78 triple-overtime win over Chicago State on Jan. 5, NJIT led by 16 in the first half and 39-25 at the break.
The Knights (7-10) opened the second half with a 9-0 run, keeping the Highlanders scoreless for more than 5 minutes, and took their only lead of the game at 52-51 with 6:07 remaining.
Tied at 60 with 1:21 left, Flores hit a jumper, then he and Woods made two free throws apiece in the final 19 seconds.
After a season that saw his shooting numbers slip, should Nigel Hayes return for his senior year at Wisconsin or take the gamble to put him name in this year's NBA draft?
Isaiah Taylor talks about his decision to declare for the NBA draft and what he will miss most about Texas.
Chattanooga women's basketball coach Jim Foster has received a one-year contract extension, the same day the school gave the men's coach a two-year extension.